Synlett 2013; 24(19): 2586-2590
DOI: 10.1055/s-0033-1339894
letter
© Georg Thieme Verlag Stuttgart · New York

Highly Diastereoselective NHC-Catalyzed [4+3] Annulation of Enals, Alde­hydes and N-Phenyl Urea/Thiourea for the Synthesis of Monocyclic trans-1,3-Diazepanes

Ibadur R. Siddiqui*
a   Laboratory of Green Synthesis, Department of Chemistry, University of Allahabad, Allahabad 211002, India   Email: dr.irsiddiqui@gmail.com
,
Anjali Srivastava
a   Laboratory of Green Synthesis, Department of Chemistry, University of Allahabad, Allahabad 211002, India   Email: dr.irsiddiqui@gmail.com
,
Shayna Shamim
a   Laboratory of Green Synthesis, Department of Chemistry, University of Allahabad, Allahabad 211002, India   Email: dr.irsiddiqui@gmail.com
,
Arjita Srivastava
a   Laboratory of Green Synthesis, Department of Chemistry, University of Allahabad, Allahabad 211002, India   Email: dr.irsiddiqui@gmail.com
,
Shireen,
Malik A. Waseem
a   Laboratory of Green Synthesis, Department of Chemistry, University of Allahabad, Allahabad 211002, India   Email: dr.irsiddiqui@gmail.com
,
Rana K. P. Singh
b   Electro-organic and Green Synthesis Lab, Department of Chemistry, University of Allahabad, Allahabad 211002, India
› Author Affiliations
Further Information

Publication History

Received: 04 July 2013

Accepted after revision: 05 September 2013

Publication Date:
16 October 2013 (online)

 


Abstract

N-Heterocyclic carbene catalyzed synthesis of 1,3-diazepanes from α,β-unsaturated aldehydes, N-phenyl urea/thiourea and aromatic aldehydes has been developed. The reactive Breslow intermediate, formed by reaction of the enal with the NHC, attacks as a d3 nucleophile at the 1-arylidene-3-arylurea derivative, which is produced by simple reaction of N-phenyl urea/thiourea with an aromatic aldehyde. The resulting intermediate, on subsequent heterocyclization, forms the product with high yield. The reaction proceeded smoothly with high atom economy, producing a new C–C and a new C–N bond in a one-pot operation.


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The 1,3-diazepane system represents an architecture that exhibits a wide range of pharmaceutical activities. Many 1,3-diazepane derivatives have been identified to have inhibitory effects on HIV-1 protease,[1] AMP deaminase,[2] cytotoxic effects on jurkat and glial cells,[3] as well as NK1 receptor-binding properties.[4] 1,3-Diazepanes with a ring-expanded nucleoside act as competitive inhibitors of both adenosine deaminase and guanase.[5] Most recently, benzo-fused 1,3-diazepanes have been screened for their antibacterial activity[6] against Gram positive as well as Gram negative microorganisms, and their application in cancer treatment[7] has also been disclosed (Figure [1]).

Zoom Image
Figure 1 Representative examples of pharmaceutically active 1,3-diazipine derivatives

Over the past two decades, N-heterocyclic carbenes (NHC) have received substantial interest due to the continuously growing number of successful and novel applications in organic synthesis.[8] NHCs belong to a versatile class of organic compounds with a formally divalent carbon that can form Breslow intermediates with enals, which can offer an unconventional bond-forming tactic. NHCs have been used to catalyze organic transformations such as benzoin and Stetter type reactions,[9] homoenolate formation,[10] and transesterification reactions.[11]

To this point, only a few procedures for the synthesis of monocyclic 1,3-diazepanes have been reported.[12] In a continuation of our program to develop simple, efficient, atom-economical and eco-compatible protocols for the synthesis of biodynamic heterocycles, we report herein a simple and convenient method for direct access to monocyclic 1,3-diazepanes from α,β-unsaturated carbonyl compounds, N-phenyl urea/thiourea and aromatic aldehydes, involving NHC-promoted intermolecular nucleophilic addition (Scheme [1]).[13]

Zoom Image
Scheme 1 Synthesis of 1,3-diazepane heterocycles by NHC-catalyzed [4+3] annulation

Table 1 Influence of Solvent on NHC-Catalyzed [4+3] Annulation of Aldehyde 1d, Urea 2 and Aromatic Aldehyde 3b

Entry

Solvent

Time (h)

Yield (%)

1

EtOH

8

trace

2

DME

4

78

3

CH2Cl2

3

91

4

toluene

4.5

74

5

DMF

5

49

6

MeCN

5

55

7

THF

3

85

8

MeOH

5

18

Initially, α,β-unsaturated aldehyde 1d, urea 2 and aromatic aldehyde 3b were selected as model substrates to optimize the reaction conditions (Table [1]). The reaction was first carried out in ethanol with 4b (10 mol%) as the catalyst, and Cs2CO3 (10 mol%) as the base at room temperature under a nitrogen atmosphere. To our disappointment, we observed very little cyclization. However, when DMF was used as the solvent and DBU was used as the base, formation of 1,3-diazepane was observed in 49% yield. This result encouraged us to optimize the reaction parameters to enhance the yield of 5d in this model system.

Table 2 Influence of NHC and Base on NHC-Catalyzed [4+3] Annulations

Entry

NHC precursor

NHC (mol%)

Base (mol%)

Time (h)

Yield (%)

 1

4a

10

DBU (10)

4

85

 2

4b

10

DBU (10)

3

91

 3

4c

10

DBU (10)

4

81

 4

4d

10

DBU (10)

4

79

 5

4b

 5

DBU (10)

4

69

 6

4b

10

DBU (15)

4

65

 7

4b

10

DBU (5)

4

62

 8

4b

10

KOH (10)

4

54

 9

4b

10

Et3N (10)

4

57

10

4b

10

pyrrolidine (10)

4.5

54

11

4b

10

Cs2CO3 (10)

4

78

As shown in Table [1], we initiated our investigations by screening solvents. Whereas the use of CH2Cl2 and THF were found to be good for this transformation, resulting in yields of 91 and 85%, respectively (Table [1], entries 3 and 7), ethanol, DME, toluene, DMF, acetonitrile, and methanol led to relatively low yields (Table [1], entries 1, 2, 4–6 and 8).

The optimal NHC catalyst for the synthesis of 1,3-diazepane 5d was 4b (91%; Table [2], entry 2); with 4a, 4c and 4d as NHC catalyst, yields were 85, 81 and 79%, respectively (Table [2], entry 1, 3 and 4). Screening for this transformation with bases such as KOH, Et3N, pyrrolidine, DBU, and Cs2CO3 revealed that the combination of 4b with DBU was more efficient than other catalyst/base combinations (Table [2], entry 2). Consequently 4b/DBU was chosen as the ideal NHC/base combination and this system was employed in all subsequent reactions. When the amount of the catalyst was decreased from 10 to 5 mol%, the yield of 1,3-diazepane was reduced (Table [2], entry 5), but the use of 15 mol% 4b did not enhance the yield.

With the optimized reaction conditions in hand, the scope of the reaction with respect to substrates was then investigated (Table [3]). α,β-Unsaturated aldehydes with an electron-withdrawing group on the aromatic ring worked well (Table [3], entries 4 and 5), giving the corresponding diazepanes in excellent yields with good diastereoselectivities. Furthermore, α,β-unsaturated aldehydes with electron-donating groups also reacted to afford diazepanes in good yields (Table [3], entries 3, 6 and 9). Aromatic aldehydes with electron-withdrawing groups provided the best yields (Table [3], entry 2, 4 and 5).

Table 3 Influence of Substituents on NHC-Catalysed [4+3] Annulations

Entry

Ar1

1

X

Ar2

5

Time (h)

Yield (%)

 1

Ph

1a

O

Ph

5a

4

77

 2

4-MeOC6H4

1b

O

4-O2NC6H4

5b

4

83

 3

4-MeC6H4

1c

O

4-MeOC6H4

5c

4.5

68

 4

4-O2NC6H4

1d

O

4-O2NC6H4

5d

3

91

 5

4-BrC6H4

1e

O

4-BrC6H4

5e

4

86

 6

4-MeC6H4

1c

O

Ph

5f

4.5

65

 7

4-O2NC6H4

1d

S

4-O2NC6H4

5g

4

83

 8

Ph

1a

S

4-O2NC6H4

5h

4.5

71

 9

4-MeC6H4

1c

S

4-MeOC6H4

5i

5

67

10

4-BrC6H4

1e

S

4-O2NC6H4

5j

4

80

A plausible mechanism for the reaction is shown in Scheme [2]. The imidazolium carbene 4b', produced by reaction of imidazolium salt 4b and DBU, adds to the enal 1 to give the Breslow intermediate (I). This generates a more reactive homoenolate (II), which attacks at the electrophilic site of the 1-arylidene-3-aryl urea/thiourea (III), produced by reaction of phenylurea/thiourea 2 with aromatic aldehyde 3, to form intermediate (IV). This intermediate then undergoes intramolecular attack of the distal nitrogen onto the carbonyl group to afford the 1,3-diazepane and regenerate the imidazolium carbene to complete the catalytic cycle (Scheme [2]).

Zoom Image
Scheme 2 Tentative mechanism of the reaction for the formation of 1,3-diazepane

The diastereoselectivity of the reaction leading to 5 was determined by 1H NMR spectroscopic analysis. The coupling constant of the vicinal methane protons was in the range of J 6,7 = 9.1–9.4 Hz, which is indicative of a trans relationship.

Zoom Image
Figure 2 1H NMR coupling with 5 indicates a trans relationship between H-6 and H-7

In conclusion, we have developed a novel NHC-catalyzed multicomponent reaction that enables facile access to 1,3-diazepane derivatives of potential pharmaceutical importance in an expedient manner in a one-pot operation. This methodology features atom- and step-economies.


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Acknowledgment

The authors gratefully acknowledge financial support by the CSIR, New Delhi and particularly acknowledge the SAIF, Chandigarh for spectroscopic analysis.

Supporting Information

  • References and Notes

  • 1 Lam PY. S, Jahdav PK, Eyermann CJ, Hodge CN, Ru Y, Bacheler LT, Meek JL, Otto MJ, Rayner MM, Wong YN, Chang C.-H, Weber PC, Jackson DA, Sharpe TR, Erickson-Viitanen S. Science 1994; 263: 380
  • 2 Bookser BC, Kasibhatla SR, Appleman JR, Erion MD. J. Med. Chem. 2000; 43: 1495
  • 3 Rotas G, Natchkebia K, Natsvlishvili N, Kekelidze M, Kimbaris A, Varvounis G, Mikeladze D. Bioorg. Med. Chem. Lett. 2005; 15: 3220
  • 5 Wang L, Hosmane RS. Bioorg. Med. Chem. Lett. 2001; 11: 2893
  • 6 Kharate RM, Deohate PP, Berad BN. Chem. Sci. Trans. 2013; 2: 65
  • 7 Kondaskar A, Kondaskar S, Kumar R, Fishbein JC, Muvarak N, Lapidus RG, Sadowska M, Edelman MJ, Bol GM, Vesuna F, Raman V, Hosmane RS. ACS Med. Chem. Lett. 2011; 2: 252
  • 13 Synthesis of 1,3-Diazepanes 5aj; General Procedure: A flame-dried round-bottom flask was charged with imidazolium salt 4b (0.034 g, 0.1 mmol, 10 mol%), α,β-unsaturated aldehyde (1 mmol) and CH2Cl2 (4 mL) under a positive pressure of nitrogen, followed by addition of DBU (0.0152 g, 0.1 mmol, 10 mol%) by using a syringe, and the resulting orange solution was stirred for 30 min at room temperature. To this solution, aromatic aldehyde (1.0 mmol) and N-phenyl urea/thiourea (1.0 mmol) was added by using a syringe and the reaction mixture was stirred for a further 2.5 h (completion of reaction was confirmed by TLC analysis). Subsequently, water (5 mL) was added and the reaction mixture was extracted with EtOAc. The organic phase was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The crude product was then purified by column chromatography (silica gel; Merck, 60–120 mesh; EtOAc–hexane, 3:22) to afford the pure product. 6-(4-Methoxyphenyl)-7-(4-nitrophenyl)-3-phenyl-1,3-diazepane-2,4-dione (5b);Yellow solid; mp 227–229 °C. 1H NMR (400 MHz, CDCl3): δ = 2.44 (dd, J 5Ha–5Hb = 14.4, J 5Ha–6H = 10.4 Hz, 1 H), 2.69 (dd, J 5Hb–5Ha = 14.4, J 5Hb–6H = 2.4 Hz, 1 H), 3.73 (s, 3 H), 4.05 (ddd, J 6H-5Ha = 10.4, J 6H-7H = 9.4, J 6H-5Hb = 2.4 Hz, 1 H), 5.30 (dd, J 7H-6H = 9.4, J 7H-NH = 2.1 Hz, 1 H), 6.36 (d, J NH-7H = 2.1 Hz, 1 H), 6.69–7.02 (m, 4 H), 7.09–7.64 (m, 5 H), 7.38–8.14 (m, 4 H). 13C NMR (100 MHz, CDCl3): δ = 171.8, 157.9, 155.4, 146.4, 145.5, 140.9, 135.7, 129.9, 129.0, 127.2, 124.7, 121.8, 121.3, 114.0, 57.6, 55.9, 40.5, 37.4. MS: m/z = 431.15 [M+]. Anal. Calcd for C24H21N3O5: C, 66.81; H, 4.91; N, 9.74. Found: C, 66.86; H, 4.87; N, 9.79. 6,7-Bis(4-nitrophenyl)-3-phenyl-1,3-diazepane-2,4-dione (5d): Yellow solid; mp 231–233 °C. 1H NMR (400 MHz, CDCl3): δ = 2.78 (dd, J 5Ha-5Hb = 14.4, J 5Ha-6H =10.3 Hz, 1 H), 3.09 (dd, J 5Hb-5Ha = 14.4, J 5Hb-6H =2.3 Hz, 1 H), 4.35 (ddd, J 6H-5Ha = 10.3, J 6H-7H = 9.4, J 6H-5Hb = 2.3 Hz, 1 H), 5.63 (dd, J 7H-6H = 9.4, J 7H-NH = 2.3 Hz, 1 H), 6.76 (d, J NH-7H = 2.3 Hz, 1 H), 7.09–7.78 (m, 5 H), 7.39–8.12 (m, 4 H), 7.45–8.24 (m, 4 H). 13C NMR (100 MHz, CDCl3): δ = 172.4, 156.7, 154.6, 146.9, 146.2, 145.3, 135.9, 130.2, 129.4, 127.6, 124.6, 122.5, 121.8, 120.3, 58.3, 40.7, 38.5. MS: m/z = 446.12 [M+]. Anal. Calcd for C23H18N4O6:C, 61.88; H, 4.06; N, 12.55. Found: C, 61.83; H, 4.10; N, 12.49. 6,7-Bis(4-bromophenyl)-3-phenyl-1,3-diazepane-2,4-dione (5e): Yellow solid; mp 246–248 °C. 1H NMR (400 MHz, CDCl3): δ = 2.73 (dd, J 5Ha-5Hb = 14.4, J 5Ha-6H = 10.3 Hz, 1 H), 2.85 (dd, J 5Hb-5Ha = 14.4, J 5Hb-6H = 2.3 Hz, 1 H), 4.17 (ddd, J 6H-5Ha = 10.3, J 6H-7H = 9.3, J 6H-5Hb = 2.3 Hz, 1 H), 5.35 (dd, J 7H-6H = 9.3, J 7H-NH = 2.3 Hz, 1 H), 6.12 (d, J NH-7H = 2.3 Hz, 1 H), 7.02–7.60 (m, 5 H), 7.05–7.40 (m, 4 H), 7.12–7.44 (m, 4 H). 13C NMR (100 MHz, CDCl3): δ = 171.1, 155.3, 147.2, 136.4, 135.8, 135.3, 131.6, 129.9, 129.0, 128.7, 128.1, 124.9, 121.5, 120.6, 57.6, 39.3, 36.5, 24.3. MS: m/z = 511.97 [M+]. Anal. Calcd for C23H18Br2N2O2: C, 53.72; H, 3.53; N, 5.45. Found: C, 53.76; H, 3.59; N, 5.50.

  • References and Notes

  • 1 Lam PY. S, Jahdav PK, Eyermann CJ, Hodge CN, Ru Y, Bacheler LT, Meek JL, Otto MJ, Rayner MM, Wong YN, Chang C.-H, Weber PC, Jackson DA, Sharpe TR, Erickson-Viitanen S. Science 1994; 263: 380
  • 2 Bookser BC, Kasibhatla SR, Appleman JR, Erion MD. J. Med. Chem. 2000; 43: 1495
  • 3 Rotas G, Natchkebia K, Natsvlishvili N, Kekelidze M, Kimbaris A, Varvounis G, Mikeladze D. Bioorg. Med. Chem. Lett. 2005; 15: 3220
  • 5 Wang L, Hosmane RS. Bioorg. Med. Chem. Lett. 2001; 11: 2893
  • 6 Kharate RM, Deohate PP, Berad BN. Chem. Sci. Trans. 2013; 2: 65
  • 7 Kondaskar A, Kondaskar S, Kumar R, Fishbein JC, Muvarak N, Lapidus RG, Sadowska M, Edelman MJ, Bol GM, Vesuna F, Raman V, Hosmane RS. ACS Med. Chem. Lett. 2011; 2: 252
  • 13 Synthesis of 1,3-Diazepanes 5aj; General Procedure: A flame-dried round-bottom flask was charged with imidazolium salt 4b (0.034 g, 0.1 mmol, 10 mol%), α,β-unsaturated aldehyde (1 mmol) and CH2Cl2 (4 mL) under a positive pressure of nitrogen, followed by addition of DBU (0.0152 g, 0.1 mmol, 10 mol%) by using a syringe, and the resulting orange solution was stirred for 30 min at room temperature. To this solution, aromatic aldehyde (1.0 mmol) and N-phenyl urea/thiourea (1.0 mmol) was added by using a syringe and the reaction mixture was stirred for a further 2.5 h (completion of reaction was confirmed by TLC analysis). Subsequently, water (5 mL) was added and the reaction mixture was extracted with EtOAc. The organic phase was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. The crude product was then purified by column chromatography (silica gel; Merck, 60–120 mesh; EtOAc–hexane, 3:22) to afford the pure product. 6-(4-Methoxyphenyl)-7-(4-nitrophenyl)-3-phenyl-1,3-diazepane-2,4-dione (5b);Yellow solid; mp 227–229 °C. 1H NMR (400 MHz, CDCl3): δ = 2.44 (dd, J 5Ha–5Hb = 14.4, J 5Ha–6H = 10.4 Hz, 1 H), 2.69 (dd, J 5Hb–5Ha = 14.4, J 5Hb–6H = 2.4 Hz, 1 H), 3.73 (s, 3 H), 4.05 (ddd, J 6H-5Ha = 10.4, J 6H-7H = 9.4, J 6H-5Hb = 2.4 Hz, 1 H), 5.30 (dd, J 7H-6H = 9.4, J 7H-NH = 2.1 Hz, 1 H), 6.36 (d, J NH-7H = 2.1 Hz, 1 H), 6.69–7.02 (m, 4 H), 7.09–7.64 (m, 5 H), 7.38–8.14 (m, 4 H). 13C NMR (100 MHz, CDCl3): δ = 171.8, 157.9, 155.4, 146.4, 145.5, 140.9, 135.7, 129.9, 129.0, 127.2, 124.7, 121.8, 121.3, 114.0, 57.6, 55.9, 40.5, 37.4. MS: m/z = 431.15 [M+]. Anal. Calcd for C24H21N3O5: C, 66.81; H, 4.91; N, 9.74. Found: C, 66.86; H, 4.87; N, 9.79. 6,7-Bis(4-nitrophenyl)-3-phenyl-1,3-diazepane-2,4-dione (5d): Yellow solid; mp 231–233 °C. 1H NMR (400 MHz, CDCl3): δ = 2.78 (dd, J 5Ha-5Hb = 14.4, J 5Ha-6H =10.3 Hz, 1 H), 3.09 (dd, J 5Hb-5Ha = 14.4, J 5Hb-6H =2.3 Hz, 1 H), 4.35 (ddd, J 6H-5Ha = 10.3, J 6H-7H = 9.4, J 6H-5Hb = 2.3 Hz, 1 H), 5.63 (dd, J 7H-6H = 9.4, J 7H-NH = 2.3 Hz, 1 H), 6.76 (d, J NH-7H = 2.3 Hz, 1 H), 7.09–7.78 (m, 5 H), 7.39–8.12 (m, 4 H), 7.45–8.24 (m, 4 H). 13C NMR (100 MHz, CDCl3): δ = 172.4, 156.7, 154.6, 146.9, 146.2, 145.3, 135.9, 130.2, 129.4, 127.6, 124.6, 122.5, 121.8, 120.3, 58.3, 40.7, 38.5. MS: m/z = 446.12 [M+]. Anal. Calcd for C23H18N4O6:C, 61.88; H, 4.06; N, 12.55. Found: C, 61.83; H, 4.10; N, 12.49. 6,7-Bis(4-bromophenyl)-3-phenyl-1,3-diazepane-2,4-dione (5e): Yellow solid; mp 246–248 °C. 1H NMR (400 MHz, CDCl3): δ = 2.73 (dd, J 5Ha-5Hb = 14.4, J 5Ha-6H = 10.3 Hz, 1 H), 2.85 (dd, J 5Hb-5Ha = 14.4, J 5Hb-6H = 2.3 Hz, 1 H), 4.17 (ddd, J 6H-5Ha = 10.3, J 6H-7H = 9.3, J 6H-5Hb = 2.3 Hz, 1 H), 5.35 (dd, J 7H-6H = 9.3, J 7H-NH = 2.3 Hz, 1 H), 6.12 (d, J NH-7H = 2.3 Hz, 1 H), 7.02–7.60 (m, 5 H), 7.05–7.40 (m, 4 H), 7.12–7.44 (m, 4 H). 13C NMR (100 MHz, CDCl3): δ = 171.1, 155.3, 147.2, 136.4, 135.8, 135.3, 131.6, 129.9, 129.0, 128.7, 128.1, 124.9, 121.5, 120.6, 57.6, 39.3, 36.5, 24.3. MS: m/z = 511.97 [M+]. Anal. Calcd for C23H18Br2N2O2: C, 53.72; H, 3.53; N, 5.45. Found: C, 53.76; H, 3.59; N, 5.50.

Zoom Image
Figure 1 Representative examples of pharmaceutically active 1,3-diazipine derivatives
Zoom Image
Scheme 1 Synthesis of 1,3-diazepane heterocycles by NHC-catalyzed [4+3] annulation
Zoom Image
Scheme 2 Tentative mechanism of the reaction for the formation of 1,3-diazepane
Zoom Image
Figure 2 1H NMR coupling with 5 indicates a trans relationship between H-6 and H-7