Synlett
DOI: 10.1055/a-2577-0837
letter
Emerging Trends in Organic Chemistry: A Focus on India

Design, Synthesis, and In Silico Studies of 1,2,3-Triazole-Linked Coumarin–Chalcone Hybrids as Potential Antifungal Agents

Kavita Kavita
a   Bioorganic Laboratory, Department of Chemistry, University of Delhi, Delhi, 110007, India
,
Sumit Kumar
a   Bioorganic Laboratory, Department of Chemistry, University of Delhi, Delhi, 110007, India
,
Vipin K. Maikhuri
a   Bioorganic Laboratory, Department of Chemistry, University of Delhi, Delhi, 110007, India
,
Gautam Deo
b   Department of Chemistry, University of Delhi, Delhi, 110007, India
,
Mrityunjay K. Tiwari
b   Department of Chemistry, University of Delhi, Delhi, 110007, India
,
Jyotirmoy Maity
a   Bioorganic Laboratory, Department of Chemistry, University of Delhi, Delhi, 110007, India
c   Department of Chemistry, St. Stephen’s College, University of Delhi, Delhi, 110007, India
,
Brajendra K. Singh
a   Bioorganic Laboratory, Department of Chemistry, University of Delhi, Delhi, 110007, India
› Author Affiliations

We appreciate the funding provided by the Institute of Eminence (IOE), University of Delhi, which has contributed to further research and development.
 


We dedicate this article to the fond memory of our beloved late Professor Ashok K. Prasad.

Abstract

Fungal infections are a growing global health concern due to their rising incidence and increasing resistance to existing drugs. With the aim of developing new antifungal candidates, this study introduces a series of novel coumarin–chalcone hybrids linked through a 1,2,3-triazole moiety. The hybrids were synthesized using Cu(I)-catalyzed azide–alkyne cycloaddition, with optimized conditions giving yields of 75–85%. In silico absorption, distribution, metabolism, and excretion (ADME) analysis predicted favorable pharmacokinetic properties, suggesting that the products have potential as drug-like candidates. Molecular-docking studies revealed strong binding interactions with sterol 14α-demethylase, a crucial enzyme in fungal ergosterol biosynthesis, indicating that the products have potential as antifungal agents. All the synthesized compounds showed a relatively more-negative binding energy than the standard fungicide hexaconazole, indicating their affinity for the active pocket. These triazole-linked coumarin–chalcone hybrids show promise as antifungal candidates due to their effective synthesis, favorable ADME properties, and strong binding interactions with sterol 14α-demethylase. They are, therefore, viable leads for further biological evaluation and potential therapeutic applications.


#

Fungal infections have escalated into a critical global health concern, marked by a rising incidence and the alarming development of resistance to existing antifungal drugs. Invasive fungal infections, in particular, pose a severe threat, contributing to high mortality rates and affecting over a billion individuals worldwide, with approximately 1.7 million deaths annually. Recognizing this, the World Health Organization has classified fungal infections as a significant public health threat.[1] [2] [3] [4]

The escalating prevalence of these infections is further compounded by the emergence of multidrug-resistant fungal strains, rendering many current antifungal therapies ineffective or excessively toxic. Consequently, there is an urgent need for more-effective treatment options. Researchers are actively exploring novel antifungal agents that offer enhanced therapeutic efficacy and reduced toxicity to combat drug resistance and high mortality rates.[5]

Among the most widely utilized antifungal treatments, azole derivatives have demonstrated remarkable efficacy by targeting ergosterol, a crucial component of the fungal cell membrane. These compounds inhibit the lanosterol 14α-demethylase enzyme, thereby disrupting ergosterol synthesis and compromising the integrity of the fungal cell membrane.[3] [6]

Because of their pivotal role in antifungal therapy, substantial research efforts have been dedicated to developing new potent molecules based on the azole scaffold to improve efficacy and overcome emerging drug resistance.[7] [8] These antifungal agents are categorized into imidazoles, containing two nitrogen atoms (e.g., ketoconazole, miconazole, clotrimazole), and triazoles, containing three nitrogen atoms (e.g., itraconazole, fluconazole). While imidazoles, with the exception of ketoconazole, are primarily used for superficial fungal infections, triazoles are effective against both superficial and systemic mycoses and offer a safety advantage due to their higher selectivity toward fungal cytochrome P-450 enzymes.[9,10] Furthermore, the triazole moiety can serve as a linker to connect two pharmacophores, yielding novel drug molecules.[11–14]

Molecular hybridization is an emerging methodology in medicinal chemistry that facilitates the design and synthesis of molecular hybrids with superior pharmacological properties by combining two or more pharmacophores for improved efficacy.[15] [16] The hybridization of 1,2,3-triazole with other antimicrobial pharmacophores represents a judicious strategic approach to the development of new and effective antifungal candidates to combat drug-sensitive and drug-resistant infections.[17] Over the past years, various conjugates incorporating this biologically valuable core have been reported, highlighting their significant fungicidal potential and potent effects on diverse disease-causing targets (Figure [1]).[18] [19] [20] [21]

Zoom Image
Figure 1 Some examples of biologically active antifungal agents

In this pursuit, we focused on integrating the 1,2,3-triazole linker with coumarin and chalcone pharmacophores. Coumarins are recognized for their diverse biological activities and broad pharmacological properties, with over 1300 compounds documented.[22] [23] Recent research has demonstrated that combining coumarins with nitrogen-containing heterocyclic structures, such as azetidine, thiazolidine, thiazole, or oxadiazole, enhances their antimicrobial potency and expands their activity against a wider range of pathogens.[24,25] Given their promising biological profile, coumarin-based hybrids hold significant potential for developing novel antifungal therapeutics.[26]

Chalcones and their heterocyclic analogues exhibit antibacterial, antifungal, antiinflammatory, and anticancer properties.[27] [28] Their potent antifungal activity is attributed to their ability to disrupt fungal cell membranes and inhibit ergosterol biosynthesis.[3,29,30] The structural versatility of chalcones permits modifications that enhance efficacy against resistant fungal strains.[29–31]

Building upon the antimicrobial and antifungal activities of coumarin, triazole, and chalcone moieties, we report the synthesis, characterization, and a distribution, metabolism, and excretion (ADME) evaluation, as well as molecular-docking studies of coumarin–chalcone hybrids linked through a 1,2,3-triazole moiety (Figure [2]).

Zoom Image
Figure 2 Design protocol for the target hybrid compounds

We envisioned that the targeted 4-{4-[(4-cinnamoylphenoxy)methyl]-1H-1,2,3-triazol-1-yl}-2H-chromen-2-ones might be synthesized by Cu(I)-catalyzed click reactions between 4-azido-2H-chromen-2-ones and various substituted propargylated chalcones (Scheme [1]). Substituted 4-azido2H-chromen-2-ones could be readily obtained from the corresponding 4-hydroxycoumarins in two steps, whereas propargylated chalcones could be synthesized from 4-hydroxyacetophenone in two steps with high yields.

Zoom Image
Scheme 1 Retrosynthetic routes for the synthesis of 4-{4-[(4-cinnamoylphenoxy)methyl]-1H-1,2,3-triazol-1-yl}-2H-chromen-2-one derivatives

The synthesis of triazole-linked coumarin–chalcone hybrid molecules involved four steps. In the first step, 4-hydroxyacetophenone (2) was allowed to react with propargyl bromide (3) in the presence of K2CO3 in N,N-dimethylformamide (DMF) at room temperature for 12 hours to afford 1-[4-(prop-2-yn-1-yloxy)phenyl]ethan-1-one (4) (Scheme [2]).[32] In the second step, propargylated chalcone derivatives 6ao were synthesized by following a reported procedure involving a base-catalyzed aldol condensation reaction of 1-[4-(prop-2-yn-1-yloxy)phenyl]ethan-1-one (4) with a series of substituted aromatic aldehydes 5ao (Scheme [2]).[32] All the products were obtained in good to excellent yield.

Zoom Image
Scheme 2 Synthesis of propargylated chalcones 6ao

Substituted 4-hydroxycoumarins 7ac were obtained by following a reported procedure[33] involving a Friedel–Crafts acetylation of substituted phenols with diethyl carbonate. In the next step, 4-azidocoumarins 9ac were accessed by a sequential two-step one-pot reaction between 4-hydroxycoumarins 7ac and (benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP) in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) as a base, followed by reaction with NaN3 in the presence of 18-crown-6 (Scheme [3]).[34]

Zoom Image
Scheme 3 Synthesis of 4-azidocoumarins 9ac

Table 1 Optimization of the Reaction Conditions for the Synthesis of 10a from Propargylated Chalcone 6a and 4-Azidocoumarin 9a a

Entry

Solvent

Catalyst (mol%)

Time (h)

Temp (°C)

Yieldb (%)

 1

t-BuOH

CuSO4 (10) + NaAsc (20)

10

25

45

 2

t-BuOH

CuSO4 (10)

15

25

NRc

 3

t-BuOH

CuBr (10)

15

25

NR

 4

t-BuOH

CuI (10)

10

25

65

 5

THF

CuI (10)

10

25

40

 6

MeCN

CuI (10)

10

25

20

 7

DMF

CuI (10)

10

25

NR

 8

DMSO

CuI (10)

10

25

NR

 9

1,4-dioxane

CuI (10)

10

25

28

10

EtOH

CuI (10)

10

25

42

11

MeOH

CuI (10)

10

25

40

12

2-MeTHF

CuI (10)

 8

25

56

13

PEG-400

CuI (10)

 6

25

73

14

PEG-400

CuI (10)

 6

50

79

15

PEG-400

CuI (10)

5

60

85

16

PEG-400

CuI (10)

 5

70

78

17

PEG-400

CuI (10)

 4

80

63

18

PEG-400

CuI (20)

 5

60

84

19

PEG-400

CuI (5)

 5

60

51

a Reaction conditions: 6a (1.0 equiv), 9a (1.1 equiv), catalyst, solvent (3 mL).

b Isolated yield.

c NR = no reaction.

To begin our study, a click reaction[35] [36] was carried out between the propargylated chalcone 6a and the azidocoumarin 9a. The reaction was performed in the presence of sodium ascorbate (NaAsc) and CuSO4·5H2O in t-BuOH at ambient temperature,[37] and afforded the desired product 10a in 45% yield (Table [1], entry 1). Subsequently, the click reaction of the propargylated chalcone 6a and azidocoumarin 9a was explored using various catalysts in the same solvent at ambient temperature to optimize both the yield and efficiency of the reaction (entries 2–4). CuI emerged as the most effective catalyst, giving a 65% yield of 10a (entry 4). In an attempt to improve the efficiency of the reaction, various solvents were screened, [THF, MeCN, DMF, DMSO, 1,4-dioxane, EtOH, MeOH, 2-methyltetrahydrofuran (2-MeTHF) and PEG 400] (entries 5–13). The highest yield (73%) of the 10a was obtained with PEG-400, whereas the other solvents gave a lower or no yield of 10a.

Increasing the temperature to 50 or 60 °C improved the yield to 79 and 85%, respectively (Table [1], entries 14 and 15). However, a further increase in the temperature to 70 or 80 °C resulted in a decline in the product yield, indicating that excessively high temperatures have a detrimental effect on the reaction outcome (entries 16 and 17). Increasing the CuI concentration from 10 mol % to 20 mol % did not lead to any improvement in the yield of the desired product (entry 18), whereas a decrease in the CuI concentration to 5 mol %, resulted in an inferior yield of 51% (entry 19). Among the explored set of conditions, 10 mol % of CuI in PEG-400 as solvent at 60 °C was found to be the most favorable for synthesizing the triazole-linked coumarin-chalcone hybrid 10a (entry 15).

With the optimized reaction conditions, the click reactions of various propargylated chalcones 6ao and azidocoumarins 9ac were explored in PEG-400 at 60 °C. All the substrates reacted well and gave the desired triazole-linked coumarin–chalcone hybrid molecules 10ar in good yields of 75–85% (Scheme [4]).

Zoom Image
Scheme 4 Synthesis of chalcone-coumarin hybrid molecules 10ar by a Cu(I)-catalyzed azide–alkyne cycloaddition reaction (CuAAC)

The structures of all the synthesized compounds were unambiguously established through spectral analyses (IR, 1H NMR, 13C NMR, 1H–1H COSY NMR, 1H–13C HETCOR NMR, DEPT-135, and HRMS). The structures of known compounds were further confirmed by comparing their physical and spectral properties with those reported in the literature.[32] [33] [34]

Next, the physicochemical properties of the synthesized analogues 10ar were analyzed using the SwissADME online tool,[38] applying Lipinski’s Rule of Five[39] and Veber’s rule[40] to assess their drug-likeness. As shown in Table [2], all compounds except one met Veber’s criteria and only a few deviated from Lipinski’s guidelines. These computational findings indicate that the coumarin–chalcone linked-1,2,3-triazole hybrids possess favorable absorption and permeability characteristics, suggesting good potential for oral bioavailability.

Table 2 Physiochemical Properties of Synthesized Compounds 10ar Estimated by Using SWISSADME

Compd

MWa

nRBb

nHBAc

nHBDd

TPSAe

LogP f

Lipinski
violations

Drug-likeness

Lipinski

Veber

10a

449.46

 7

6

0

 87.22

4.16

0

yes

yes

10b

467.45

 7

7

0

 87.22

4.45

0

yes

yes

10c

479.48

 8

7

0

 96.45

4.18

0

yes

yes

10d

483.90

 7

6

0

 87.22

4.71

0

yes

yes

10e

483.90

 7

6

0

 87.22

4.68

0

yes

yes

10f

528.35

 7

6

0

 87.22

4.77

1

yes

yes

10g

463.48

 7

6

0

 87.22

4.47

0

yes

yes

10h

518.35

 7

6

0

 87.22

5.20

2

yes

yes

10i

509.51

 9

8

0

105.68

4.15

1

yes

yes

10j

479.48

 8

7

0

 96.45

4.16

0

yes

yes

10k

479.48

 8

7

0

 96.45

4.15

0

yes

yes

10l

509.51

 9

8

0

105.68

4.14

1

yes

yes

10m

513.93

 8

7

0

 96.45

4.68

1

yes

yes

10n

555.58

10

7

0

 96.45

5.30

1

yes

yes

10o

615.63

12

9

0

114.91

5.34

1

yes

no

10p

455.49

 7

6

0

115.46

4.25

0

yes

yes

10q

450.45

 7

7

0

100.11

3.43

0

yes

yes

10r

439.42

 7

7

0

100.36

3.62

0

yes

yes

a Molecular weight of the synthesized compound in g/mol.

b Number of rotatable bonds.

c Number of hydrogen-bond acceptors

d Number of hydrogen-bond donors.

e Topological polar surface area.

f Logarithm of the partition coefficient between water and n-octanol.

Molecular docking is a powerful computational technique that is widely used in drug discovery to predict the binding interactions between ligands and target proteins, assisting in the rational design of novel therapeutics. In this study, AutoDock Tools [41] was employed to analyze the binding affinity and interaction profiles of the synthesized 1,2,3-triazole-linked coumarin–chalcone hybrid derivatives with sterol 14α-demethylase (CYP51) (PDB ID: 3GW9), a key enzyme involved in ergosterol biosynthesis that is essential for maintaining the integrity of the fungal cell membrane.[3] Inhibition of this enzyme disrupts ergosterol production, leading to fungal cell death, making it a strategic target for antifungal drug development.[3]

The docking results demonstrated that all the synthesized compounds exhibited stronger binding affinities than the reference antifungal drug hexaconazole (–7.5 kcal/mol), with compounds 10k and 10n showing the most-negative binding energies of –10.6 and –10.8 kcal/mol, respectively (Table [3], entries 11 and 14). These results indicate a high binding strength and potential enhanced antifungal efficacy.

Table 3 Docking of Compounds 10ar and Hexaconazole (Control) with Sterol 14α-Demethylase

Entry

Compd

Binding energy
(kcal/mol)

Entry

Compd

Binding energy
(kcal/mol)

 1

10a

–9.5

11

10k

–10.6

 2

10b

–9.5

12

10l

 –9.7

 3

10c

–9.4

13

10m

 –8.4

 4

10d

–8.5

14

10n

–10.8

 5

10e

–7.8

15

10o

–10.1

 6

10f

–7.9

16

10p

 –8.4

 7

10g

–8.7

17

10q

 –8.3

 8

10h

–8.5

18

10r

 –8.3

 9

10i

–9.2

19

hexaconazole

 –7.5

10

10j

–9.8

The binding interactions of compounds 10k and 10n were further analyzed to understand their molecular interactions with the active site residues of CYP51 (Figure [3] and Supporting Information, Figure S40).

Zoom Image
Figure 3 Binding confirmation and interaction of hexaconazole, 10k, and 10n, with the binding sites of the target protein CYP51

The results suggested that the synthesized coumarin-chalcone linked-1,2,3-triazole hybrids 10ar might exhibit stronger target engagement and, potentially, superior antifungal activity compared with hexaconazole.

These findings highlight the potential of 1,2,3-triazole-linked coumarin–chalcone hybrids as next-generation antifungal agents, exhibiting stronger and more specific binding interactions with CYP51 compared with conventional azole antifungals. Further biological validation through in vitro and in vivo studies will be necessary to confirm the therapeutic potential of the products and to establish them as promising candidates for antifungal drug development.

In conclusion, a novel series of coumarin-chalcone hybrids linked by a 1,2,3-triazole moiety were successfully designed and synthesized by a Cu(I)-catalyzed azide–alkyne cycloaddition, commonly known as click chemistry.[42] The optimized reaction conditions, employing PEG-400 as a solvent and CuI (10 mol%) as a catalyst at 60 °C, provided an efficient and high-yielding synthetic route, achieving yields ranging from 75 to 85%. The structural integrity of the synthesized compounds was rigorously confirmed through FT-IR, NMR, and HRMS analyses.

In silico ADME analysis revealed favorable pharmacokinetic profiles for the synthesized hybrids. Notably, the majority of the compounds adhered to Lipinski’s and Veber’s rules, indicating good drug-likeness and potential oral bioavailability. Furthermore, molecular-docking studies corroborated the antifungal potential of these hybrids, demonstrating strong binding interactions with sterol 14α-demethylase (CYP51), a crucial enzyme in fungal ergosterol biosynthesis. Significantly, the binding energies of the synthesized compounds were more negative than that of the standard fungicide hexaconazole, highlighting their potent affinity toward the active site of the enzyme.

Overall, this study demonstrated the promise of these triazole-linked coumarin–chalcone hybrids as potential antifungal candidates. Their efficient synthesis, characterized molecular interactions, and favorable ADME properties position them as viable leads for further biological evaluation and potential therapeutic applications.


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Conflict of Interest

The authors declare no conflict of interest.

Acknowledgment

We appreciate the assistance provided by USIC and the Department of Chemistry, University of Delhi, for recording NMR, HRMS and IR data. K.K. and S.K. thank CSIR for Awards of Senior Research Fellowships.

Supporting Information

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  • 42 1,2,3-Triazole-Linked CoumarinChalcone Hybrids 10ar; General Procedure In a 50 mL round-bottomed flask, the appropriate propargylated chalcone 6 (1.96 mmol) and 4-azidocoumarin 9 (2.28 mmol) were dissolved in PEG-400. CuI (10 mol %, 0.19 mmol) was added, and the resulting mixture was stirred at 60 °C for 4–6 h until the reaction was complete (TLC). The product was then extracted with EtOAc, and the solution was concentrated under reduced pressure in a rotary evaporator. The resulting crude product was purified by column chromatography [silica gel, EtOAc–PE (gradient)]. 4-[4-({4-[(2E)-3-Phenylprop-2-enoyl]phenoxy}methyl)-1H-1,2,3-triazol-1-yl]-2H-chromen-2-one (10a) Purified by column chromatography (silica gel, 40% EtOAc–PE) as a white solid; yield: 85%; mp 201–203 °C. IR (KBr): 3140, 1710, 1656, 1587, 1438, 1170, 1017, 1240, 1050, 997 cm–1. 1H NMR (400 MHz, CDCl3): δ = 8.10 (s, 1 H), 8.08 (d, J = 8.9 Hz, 2 H), 7.86 (dd, J = 8.2, 1.6 Hz, 1 H), 7.82 (d, J = 15.8 Hz, 1 H), 7.71–7.64 (m, 3 H), 7.55 (d, J = 15.6 Hz, 1 H), 7.49 (d, J = 8.4 Hz, 1 H), 7.42 (dd, J = 5.0, 1.9 Hz, 3 H), 7.36–7.40 (m, 1 H), 7.10 (d, J = 8.9 Hz, 2 H), 6.59 (s, 1 H), 5.44 (s, 2 H). 13C NMR (100.6 MHz, CDCl3): δ = 188.8, 161.7, 159.7, 154.5, 146.8, 144.8, 144.5, 135.1, 133.9, 132.1, 131.1, 130.6, 129.1, 128.6, 125.6, 125.3, 124.0, 121.8, 117.8, 114.7, 114.4, 110.3, 61.9. HRMS (ESI): m/z [M + H]+ calcd for C27H20N3O4: 450.1448; found: 450.1455.

Corresponding Author

Brajendra K. Singh
Bioorganic Laboratory, Department of Chemistry, University of Delhi
Delhi, 110007
India   

Publication History

Received: 28 February 2025

Accepted after revision: 07 April 2025

Accepted Manuscript online:
07 April 2025

Article published online:
30 June 2025

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  • References and Notes

  • 1 Kainz K, Bauer MA, Madeo F, Carmona-Gutierrez D. Microb. Cell 2020; 7: 143
  • 2 Bongomin F, Gago S, Oladele RO, Denning DW. J. Fungi 2017; 3: 57
  • 3 Kathiravan MK, Salake AB, Chothe AS, Dudhe PB, Watode RP, Mukta MS, Gadhwe S. Bioorg. Med. Chem. 2012; 20: 5678
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  • 42 1,2,3-Triazole-Linked CoumarinChalcone Hybrids 10ar; General Procedure In a 50 mL round-bottomed flask, the appropriate propargylated chalcone 6 (1.96 mmol) and 4-azidocoumarin 9 (2.28 mmol) were dissolved in PEG-400. CuI (10 mol %, 0.19 mmol) was added, and the resulting mixture was stirred at 60 °C for 4–6 h until the reaction was complete (TLC). The product was then extracted with EtOAc, and the solution was concentrated under reduced pressure in a rotary evaporator. The resulting crude product was purified by column chromatography [silica gel, EtOAc–PE (gradient)]. 4-[4-({4-[(2E)-3-Phenylprop-2-enoyl]phenoxy}methyl)-1H-1,2,3-triazol-1-yl]-2H-chromen-2-one (10a) Purified by column chromatography (silica gel, 40% EtOAc–PE) as a white solid; yield: 85%; mp 201–203 °C. IR (KBr): 3140, 1710, 1656, 1587, 1438, 1170, 1017, 1240, 1050, 997 cm–1. 1H NMR (400 MHz, CDCl3): δ = 8.10 (s, 1 H), 8.08 (d, J = 8.9 Hz, 2 H), 7.86 (dd, J = 8.2, 1.6 Hz, 1 H), 7.82 (d, J = 15.8 Hz, 1 H), 7.71–7.64 (m, 3 H), 7.55 (d, J = 15.6 Hz, 1 H), 7.49 (d, J = 8.4 Hz, 1 H), 7.42 (dd, J = 5.0, 1.9 Hz, 3 H), 7.36–7.40 (m, 1 H), 7.10 (d, J = 8.9 Hz, 2 H), 6.59 (s, 1 H), 5.44 (s, 2 H). 13C NMR (100.6 MHz, CDCl3): δ = 188.8, 161.7, 159.7, 154.5, 146.8, 144.8, 144.5, 135.1, 133.9, 132.1, 131.1, 130.6, 129.1, 128.6, 125.6, 125.3, 124.0, 121.8, 117.8, 114.7, 114.4, 110.3, 61.9. HRMS (ESI): m/z [M + H]+ calcd for C27H20N3O4: 450.1448; found: 450.1455.

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Figure 1 Some examples of biologically active antifungal agents
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Figure 2 Design protocol for the target hybrid compounds
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Scheme 1 Retrosynthetic routes for the synthesis of 4-{4-[(4-cinnamoylphenoxy)methyl]-1H-1,2,3-triazol-1-yl}-2H-chromen-2-one derivatives
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Scheme 2 Synthesis of propargylated chalcones 6ao
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Scheme 3 Synthesis of 4-azidocoumarins 9ac
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Scheme 4 Synthesis of chalcone-coumarin hybrid molecules 10ar by a Cu(I)-catalyzed azide–alkyne cycloaddition reaction (CuAAC)
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Figure 3 Binding confirmation and interaction of hexaconazole, 10k, and 10n, with the binding sites of the target protein CYP51